| Stage 3: Kitzbühel - Prägraten am Großvenediger, 183.7 km |
| 1. Ruslan Podgornyy (Ukr) LPR Brakes-Ballan | 4:59:52 |
| 2. Robert Gesink (Ned) Rabobank | at 0:03 |
| 3. Thomas Rohregger (Aut) Elk Haus - Simplon |
| 4. Walter Fernando Pedraza (Col) Tinkoff Credit Systems | 0:05 |
| 5. Vladimir Gusev (Rus) Astana |
| 6. Giampaolo Caruso (Ita) Ceramica Flaminia Bossini Doce | 0:08 |
| 7. Leonardo Moser (Ita) Serramenti PVC Diquigiovanni-Androni Giocattoli | 0:14 |
| 8. Paolo Bettini (Ita) Quick Step | 0:39 |
| 9. Davide Rebellin (Ita) Gerolsteiner |
| 10. Chris Anker Sorensen (Den) Team CSC Saxo Bank | both s.t. |
|
| 23. Michael Barry (Can) Team Columbia | 2:20 |
|
| GC |
| 1. Thomas Rohregger (Aut) Elk Haus - Simplon | 13:41:10 |
| 2. Ruslan Podgornyy (Ukr) LPR Brakes-Ballan | 0:07 |
| 3. Chris Anker Sorensen (Den) Team CSC Saxo Bank | 0:25 |
| 4. Vladimir Gusev (Rus) Astana | 0:27 |
| 5. Giampaolo Caruso (Ita) Ceramica Flaminia Bossini Doce | 1:33 |
| 6. Davide Rebellin (Ita) Gerolsteiner | 2:14 |
| 7. Walter Fernando Pedraza (Col) Tinkoff Credit Systems | 2:45 |
| 8. Janez Brajkovic (Slo) Astana | 2:56 |
| 9. Jure Golcer (Slo) LPR Brakes-Ballan | 3:23 |
| 10. Leonardo Moser (Ita) Serramenti PVC Diquigiovanni-Androni Giocattoli | 3:26 |
|
| 12. Michael Barry (Can) Team Columbia | 4:38 |