| Stage 2: La Chaux-de-Fonds to La Chaux-de-Fonds, 161.5km |
| 1 Oscar Freire Gomez (Esp) Rabobank |
4:06:56 |
| 2 Frantisek Rabon (Cze) Team Columbia - Highroad |
| 3 Assan Bazayev (Kaz) Astana |
| 4 Roman Kreuziger (Cze) Liquigas |
| 5 Daniel Martin (Irl) Garmin - Slipstream |
| 6 Matteo Bono (Ita) Lampre-N.G.C. |
| 7 Alexandre Moos (Sui) BMC Racing Team |
| 8 Lars Ytting Bak (Den) Team Saxo Bank |
| 9 Tadej Valjavec (Slo) AG2R - La mondiale |
| 10 Evgeni Petrov (Rus) Team Katusha |
| |
| 12 Christian Meier (Can) Garmin - Slipstream |
| 15 Michael Barry (Can) Team Columbia - Highroad |
all s.t. |
| 153 Dominique Rollin (Can) Cervélo TestTeam |
12:19 |
| |
| GC |
| 1 Gregory Rast (Sui) Astana |
6:19:13 |
| 2 Ricardo Serrano Gonzalez (Esp) Fuji-Servetto |
at 0:05 |
| 3 Lars Ytting Bak (Den) Team Saxo Bank |
0:12 |
| 4 Frantisek Rabon (Cze) Team Columbia - Highroad |
0:27 |
| 5 Oscar Freire Gomez (Esp) Rabobank |
0:28 |
| 6 Sandy Casar (Fra) Française des Jeux |
0:34 |
| 7 Tony Martin (Ger) Team Columbia - Highroad |
0:35 |
| 8 Alejandro Valverde Belmonte (Esp) Caisse d'Epargne |
0:36 |
| 9 Roman Kreuziger (Cze) Liquigas |
0:37 |
| 10 Maxim Iglinskiy (Kaz) Astana |
s.t. |
| |
| 29 Michael Barry (Can) Team Columbia - Highroad |
0:45 |
| 51 Christian Meier (Can) Garmin - Slipstream |
0:58 |
| 141 Dominique Rollin (Can) Cervélo TestTeam |
18:11 |
